J4_4P6F_009

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4P6F|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4P6F_009 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0897

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4P6F|1|RA|G|1310
4P6F|1|RA|G|1311
4P6F|1|RA|U|1312
4P6F|1|RA|U|1313
4P6F|1|RA|C|1314
*
4P6F|1|RA|G|1338
4P6F|1|RA|G|1339
4P6F|1|RA|U|1340
4P6F|1|RA|U|1341
4P6F|1|RA|A|1342
4P6F|1|RA|G|1343
*
4P6F|1|RA|C|1404
4P6F|1|RA|U|1405
*
4P6F|1|RA|A|1597
4P6F|1|RA|C|1598
4P6F|1|RA|C|1599
4P6F|1|RA|C|1600
4P6F|1|RA|G|1601
4P6F|1|RA|U|1602
4P6F|1|RA|A|1603
4P6F|1|RA|C|1604

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23