J4_4P6F_011

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4P6F|1|RA|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4P6F_011 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2007

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4P6F|1|RA|G|1444
4P6F|1|RA|A|1444|||A
4P6F|1|RA|C|1445
*
4P6F|1|RA|G|1466
4P6F|1|RA|C|1467
*
4P6F|1|RA|G|1525
4P6F|1|RA|G|1526
*
4P6F|1|RA|C|1546
4P6F|1|RA|C|1547

Current chains

Chain RA

23S ribosomal RNA

Nearby chains