J4_4P6F_021
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 4P6F|1|YA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_021 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.1006
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4P6F|1|YA|C|268
4P6F|1|YA|U|269
*
4P6F|1|YA|G|370
4P6F|1|YA|A|371
4P6F|1|YA|G|372
4P6F|1|YA|U|373
4P6F|1|YA|A|374
4P6F|1|YA|C|375
*
4P6F|1|YA|G|399
4P6F|1|YA|G|400
4P6F|1|YA|A|401
4P6F|1|YA|A|402
4P6F|1|YA|U|403
4P6F|1|YA|C|404
4P6F|1|YA|U|405
4P6F|1|YA|G|406
*
4P6F|1|YA|U|421
4P6F|1|YA|A|422
4P6F|1|YA|A|423
4P6F|1|YA|G|424
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
Coloring options: