J4_4P6F_025
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4P6F|1|YA|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_025 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0752
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
4P6F|1|YA|U|1313
4P6F|1|YA|C|1314
*
4P6F|1|YA|G|1338
4P6F|1|YA|G|1339
4P6F|1|YA|U|1340
4P6F|1|YA|U|1341
4P6F|1|YA|A|1342
4P6F|1|YA|G|1343
*
4P6F|1|YA|C|1404
4P6F|1|YA|U|1405
*
4P6F|1|YA|A|1597
4P6F|1|YA|C|1598
4P6F|1|YA|C|1599
4P6F|1|YA|C|1600
4P6F|1|YA|G|1601
4P6F|1|YA|U|1602
4P6F|1|YA|A|1603
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: