J4_4R0D_001

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CAAAUGC*GAUAG*UAA*UG

Length

17 nucleotides

Bulged bases

4R0D|1|A|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4R0D|1|A|C|435
4R0D|1|A|A|436
4R0D|1|A|A|437
4R0D|1|A|A|438
4R0D|1|A|U|439
4R0D|1|A|G|440
4R0D|1|A|C|441
*
4R0D|1|A|G|459
4R0D|1|A|A|460
4R0D|1|A|U|461
4R0D|1|A|A|462
4R0D|1|A|G|463
*
4R0D|1|A|U|476
4R0D|1|A|A|477
4R0D|1|A|A|478
*
4R0D|1|A|U|489
4R0D|1|A|G|490

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains