J4_4TUA_005

3D structure

PDB id

4TUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4TUA|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUA_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0905

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4TUA|1|RA|C|268
4TUA|1|RA|U|269
*
4TUA|1|RA|G|370
4TUA|1|RA|A|371
4TUA|1|RA|G|372
4TUA|1|RA|U|373
4TUA|1|RA|A|374
4TUA|1|RA|C|375
*
4TUA|1|RA|G|399
4TUA|1|RA|G|400
4TUA|1|RA|A|401
4TUA|1|RA|A|402
4TUA|1|RA|U|403
4TUA|1|RA|C|404
4TUA|1|RA|U|405
4TUA|1|RA|G|406
*
4TUA|1|RA|U|421
4TUA|1|RA|A|422
4TUA|1|RA|A|423
4TUA|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9