J4_4TUB_011

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0511

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4TUB|1|RA|G|1803
4TUB|1|RA|A|1804
4TUB|1|RA|C|1805
4TUB|1|RA|U|1806
4TUB|1|RA|G|1807
*
4TUB|1|RA|C|1819
4TUB|1|RA|A|1820
4TUB|1|RA|C|1821
4TUB|1|RA|A|1822
4TUB|1|RA|G|1823
*
4TUB|1|RA|C|1858
4TUB|1|RA|G|1859
4TUB|1|RA|A|1860
4TUB|1|RA|C|1861
*
4TUB|1|RA|G|1997
4TUB|1|RA|U|1998
4TUB|1|RA|A|1999
4TUB|1|RA|A|2000
4TUB|1|RA|C|2001

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2