J4_4TUD_005

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4TUD|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUD_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.095

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4TUD|1|RA|C|268
4TUD|1|RA|U|269
*
4TUD|1|RA|G|370
4TUD|1|RA|A|371
4TUD|1|RA|G|372
4TUD|1|RA|U|373
4TUD|1|RA|A|374
4TUD|1|RA|C|375
*
4TUD|1|RA|G|399
4TUD|1|RA|G|400
4TUD|1|RA|A|401
4TUD|1|RA|A|402
4TUD|1|RA|U|403
4TUD|1|RA|C|404
4TUD|1|RA|U|405
4TUD|1|RA|G|406
*
4TUD|1|RA|U|421
4TUD|1|RA|A|422
4TUD|1|RA|A|423
4TUD|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9