J4_4TUD_009

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4TUD|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUD_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0925

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4TUD|1|RA|U|1313
4TUD|1|RA|C|1314
*
4TUD|1|RA|G|1338
4TUD|1|RA|G|1339
4TUD|1|RA|U|1340
4TUD|1|RA|U|1341
4TUD|1|RA|A|1342
4TUD|1|RA|G|1343
*
4TUD|1|RA|C|1404
4TUD|1|RA|U|1405
*
4TUD|1|RA|A|1597
4TUD|1|RA|C|1598
4TUD|1|RA|C|1599
4TUD|1|RA|C|1600
4TUD|1|RA|G|1601
4TUD|1|RA|U|1602
4TUD|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23