J4_4TUD_015

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4TUD|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUD_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0616

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4TUD|1|XA|G|115
4TUD|1|XA|A|116
4TUD|1|XA|G|117
4TUD|1|XA|U|118
4TUD|1|XA|A|119
4TUD|1|XA|A|120
4TUD|1|XA|C|121
4TUD|1|XA|G|122
*
4TUD|1|XA|U|239
4TUD|1|XA|C|240
*
4TUD|1|XA|G|286
4TUD|1|XA|U|287
4TUD|1|XA|A|288
4TUD|1|XA|G|289
*
4TUD|1|XA|C|311
4TUD|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17