J4_4U1U_018

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4U1U|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1U_018 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1126

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4U1U|1|DA|C|268
4U1U|1|DA|C|269
*
4U1U|1|DA|G|370
4U1U|1|DA|A|371
4U1U|1|DA|G|372
4U1U|1|DA|U|373
4U1U|1|DA|A|374
4U1U|1|DA|G|375
*
4U1U|1|DA|U|399
4U1U|1|DA|G|400
4U1U|1|DA|A|401
4U1U|1|DA|A|402
4U1U|1|DA|U|403
4U1U|1|DA|A|404
4U1U|1|DA|U|405
4U1U|1|DA|G|406
*
4U1U|1|DA|C|421
4U1U|1|DA|A|422
4U1U|1|DA|A|423
4U1U|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28