J4_4U1V_002

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4U1V|1|AA|C|183, 4U1V|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1189

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U1V|1|AA|G|142
4U1V|1|AA|A|143
4U1V|1|AA|G|144
*
4U1V|1|AA|C|178
4U1V|1|AA|A|179
4U1V|1|AA|U|180
4U1V|1|AA|A|181
4U1V|1|AA|A|182
4U1V|1|AA|C|183
4U1V|1|AA|G|184
*
4U1V|1|AA|C|193
4U1V|1|AA|C|194
4U1V|1|AA|A|195
4U1V|1|AA|A|196
4U1V|1|AA|A|197
4U1V|1|AA|G|198
*
4U1V|1|AA|U|219
4U1V|1|AA|G|220
4U1V|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20