3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GG*UU*AC*GC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U1V_010 not in the Motif Atlas
Homologous match to J4_5J7L_024
Geometric discrepancy: 0.0761
The information below is about J4_5J7L_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_24280.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4U1V|1|BA|G|1444
4U1V|1|BA|G|1445
*
4U1V|1|BA|U|1466
4U1V|1|BA|U|1467
*
4U1V|1|BA|A|1525
4U1V|1|BA|C|1526
*
4U1V|1|BA|G|1546
4U1V|1|BA|C|1547

Current chains

Chain BA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 2.3463 s