J4_4U1V_015

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4U1V|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_015 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1521

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|CA|G|115
4U1V|1|CA|A|116
4U1V|1|CA|G|117
4U1V|1|CA|U|118
4U1V|1|CA|A|119
4U1V|1|CA|A|120
4U1V|1|CA|U|121
4U1V|1|CA|G|122
*
4U1V|1|CA|U|239
4U1V|1|CA|G|240
*
4U1V|1|CA|C|286
4U1V|1|CA|U|287
4U1V|1|CA|A|288
4U1V|1|CA|G|289
*
4U1V|1|CA|C|311
4U1V|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17