3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4U1V|1|DA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U1V_018 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1202
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4U1V|1|DA|C|268
4U1V|1|DA|C|269
*
4U1V|1|DA|G|370
4U1V|1|DA|A|371
4U1V|1|DA|G|372
4U1V|1|DA|U|373
4U1V|1|DA|A|374
4U1V|1|DA|G|375
*
4U1V|1|DA|U|399
4U1V|1|DA|G|400
4U1V|1|DA|A|401
4U1V|1|DA|A|402
4U1V|1|DA|U|403
4U1V|1|DA|A|404
4U1V|1|DA|U|405
4U1V|1|DA|G|406
*
4U1V|1|DA|C|421
4U1V|1|DA|A|422
4U1V|1|DA|A|423
4U1V|1|DA|G|424

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DH
50S ribosomal protein L9
Chain DX
50S ribosomal protein L28

Coloring options:


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