J4_4U1V_018
3D structure
- PDB id
- 4U1V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to linopristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 4U1V|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U1V_018 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1202
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U1V|1|DA|C|268
4U1V|1|DA|C|269
*
4U1V|1|DA|G|370
4U1V|1|DA|A|371
4U1V|1|DA|G|372
4U1V|1|DA|U|373
4U1V|1|DA|A|374
4U1V|1|DA|G|375
*
4U1V|1|DA|U|399
4U1V|1|DA|G|400
4U1V|1|DA|A|401
4U1V|1|DA|A|402
4U1V|1|DA|U|403
4U1V|1|DA|A|404
4U1V|1|DA|U|405
4U1V|1|DA|G|406
*
4U1V|1|DA|C|421
4U1V|1|DA|A|422
4U1V|1|DA|A|423
4U1V|1|DA|G|424
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DH
- 50S ribosomal protein L9
- Chain DX
- 50S ribosomal protein L28
Coloring options: