3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U1V_028 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0892
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

4U1V|1|DA|G|2643
4U1V|1|DA|G|2644
4U1V|1|DA|G|2645
4U1V|1|DA|C|2646
*
4U1V|1|DA|G|2674
4U1V|1|DA|A|2675
4U1V|1|DA|C|2676
*
4U1V|1|DA|G|2731
4U1V|1|DA|G|2732
4U1V|1|DA|A|2733
4U1V|1|DA|A|2734
4U1V|1|DA|G|2735
*
4U1V|1|DA|U|2769
4U1V|1|DA|G|2770
4U1V|1|DA|C|2771

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain DJ
50S ribosomal protein L13
Chain DK
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.8253 s