J4_4U1V_028

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_028 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0892

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4U1V|1|DA|G|2643
4U1V|1|DA|G|2644
4U1V|1|DA|G|2645
4U1V|1|DA|C|2646
*
4U1V|1|DA|G|2674
4U1V|1|DA|A|2675
4U1V|1|DA|C|2676
*
4U1V|1|DA|G|2731
4U1V|1|DA|G|2732
4U1V|1|DA|A|2733
4U1V|1|DA|A|2734
4U1V|1|DA|G|2735
*
4U1V|1|DA|U|2769
4U1V|1|DA|G|2770
4U1V|1|DA|C|2771

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DK

50S ribosomal protein L14