J4_4U24_002

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4U24|1|AA|C|183, 4U24|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U24_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1405

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U24|1|AA|G|142
4U24|1|AA|A|143
4U24|1|AA|G|144
*
4U24|1|AA|C|178
4U24|1|AA|A|179
4U24|1|AA|U|180
4U24|1|AA|A|181
4U24|1|AA|A|182
4U24|1|AA|C|183
4U24|1|AA|G|184
*
4U24|1|AA|C|193
4U24|1|AA|C|194
4U24|1|AA|A|195
4U24|1|AA|A|196
4U24|1|AA|A|197
4U24|1|AA|G|198
*
4U24|1|AA|U|219
4U24|1|AA|G|220
4U24|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20