J4_4U24_004

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4U24|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U24_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0755

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4U24|1|BA|C|268
4U24|1|BA|C|269
*
4U24|1|BA|G|370
4U24|1|BA|A|371
4U24|1|BA|G|372
4U24|1|BA|U|373
4U24|1|BA|A|374
4U24|1|BA|G|375
*
4U24|1|BA|U|399
4U24|1|BA|G|400
4U24|1|BA|A|401
4U24|1|BA|A|402
4U24|1|BA|U|403
4U24|1|BA|A|404
4U24|1|BA|U|405
4U24|1|BA|G|406
*
4U24|1|BA|C|421
4U24|1|BA|A|422
4U24|1|BA|A|423
4U24|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28