3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4U25|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U25_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.0787
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4U25|1|AA|G|115
4U25|1|AA|A|116
4U25|1|AA|G|117
4U25|1|AA|U|118
4U25|1|AA|A|119
4U25|1|AA|A|120
4U25|1|AA|U|121
4U25|1|AA|G|122
*
4U25|1|AA|U|239
4U25|1|AA|G|240
*
4U25|1|AA|C|286
4U25|1|AA|U|287
4U25|1|AA|A|288
4U25|1|AA|G|289
*
4U25|1|AA|C|311
4U25|1|AA|C|312

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7469 s