J4_4U25_007

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4U25|1|BA|G|1271, 4U25|1|BA|A|1272, 4U25|1|BA|U|1273, 4U25|1|BA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U25_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0542

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4U25|1|BA|C|1270
4U25|1|BA|G|1271
4U25|1|BA|A|1272
4U25|1|BA|U|1273
4U25|1|BA|A|1274
4U25|1|BA|A|1275
4U25|1|BA|A|1276
*
4U25|1|BA|U|1294
4U25|1|BA|C|1295
*
4U25|1|BA|G|1645
4U25|1|BA|C|1646
4U25|1|BA|U|1647
4U25|1|BA|U|1648
*
4U25|1|BA|A|2009
4U25|1|BA|G|2010

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22