J4_4U25_014

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U25_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0548

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4U25|1|BA|G|2643
4U25|1|BA|G|2644
4U25|1|BA|G|2645
4U25|1|BA|C|2646
*
4U25|1|BA|G|2674
4U25|1|BA|A|2675
4U25|1|BA|C|2676
*
4U25|1|BA|G|2731
4U25|1|BA|G|2732
4U25|1|BA|A|2733
4U25|1|BA|A|2734
4U25|1|BA|G|2735
*
4U25|1|BA|U|2769
4U25|1|BA|G|2770
4U25|1|BA|C|2771

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BK

50S ribosomal protein L14