J4_4U26_028

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4U26|1|CA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U26_028 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1639

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U26|1|CA|G|142
4U26|1|CA|A|143
4U26|1|CA|G|144
*
4U26|1|CA|C|178
4U26|1|CA|A|179
4U26|1|CA|U|180
4U26|1|CA|A|181
4U26|1|CA|A|182
4U26|1|CA|C|183
4U26|1|CA|G|184
*
4U26|1|CA|C|193
4U26|1|CA|C|194
4U26|1|CA|A|195
4U26|1|CA|A|196
4U26|1|CA|A|197
4U26|1|CA|G|198
*
4U26|1|CA|U|219
4U26|1|CA|G|220
4U26|1|CA|C|221

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20