J4_4U27_004

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4U27|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U27_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0667

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4U27|1|BA|C|268
4U27|1|BA|C|269
*
4U27|1|BA|G|370
4U27|1|BA|A|371
4U27|1|BA|G|372
4U27|1|BA|U|373
4U27|1|BA|A|374
4U27|1|BA|G|375
*
4U27|1|BA|U|399
4U27|1|BA|G|400
4U27|1|BA|A|401
4U27|1|BA|A|402
4U27|1|BA|U|403
4U27|1|BA|A|404
4U27|1|BA|U|405
4U27|1|BA|G|406
*
4U27|1|BA|C|421
4U27|1|BA|A|422
4U27|1|BA|A|423
4U27|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28