J4_4U27_016

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4U27|1|CA|C|183, 4U27|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U27_016 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.154

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U27|1|CA|G|142
4U27|1|CA|A|143
4U27|1|CA|G|144
*
4U27|1|CA|C|178
4U27|1|CA|A|179
4U27|1|CA|U|180
4U27|1|CA|A|181
4U27|1|CA|A|182
4U27|1|CA|C|183
4U27|1|CA|G|184
*
4U27|1|CA|C|193
4U27|1|CA|C|194
4U27|1|CA|A|195
4U27|1|CA|A|196
4U27|1|CA|A|197
4U27|1|CA|G|198
*
4U27|1|CA|U|219
4U27|1|CA|G|220
4U27|1|CA|C|221

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20