3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
4U3M|1|2|A|623, 4U3M|1|2|A|1026, 4U3M|1|2|U|1029, 4U3M|1|2|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U3M_011 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.0494
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4U3M|1|2|A|622
4U3M|1|2|A|623
4U3M|1|2|G|624
*
4U3M|1|2|C|975
4U3M|1|2|G|976
4U3M|1|2|A|977
4U3M|1|2|A|978
4U3M|1|2|A|979
4U3M|1|2|G|980
*
4U3M|1|2|C|1021
4U3M|1|2|C|1022
4U3M|1|2|A|1023
4U3M|1|2|U|1024
4U3M|1|2|A|1025
4U3M|1|2|A|1026
4U3M|1|2|A|1027
4U3M|1|2|C|1028
4U3M|1|2|U|1029
4U3M|1|2|A|1030
4U3M|1|2|U|1031
4U3M|1|2|G|1032
*
4U3M|1|2|U|1103
4U3M|1|2|U|1104

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain C1
40S ribosomal protein S11-A
Chain C3
40S ribosomal protein S13
Chain C4
40S ribosomal protein S14-A
Chain D2
40S ribosomal protein S22-A
Chain D3
40S ribosomal protein S23-A
Chain D6
40S ribosomal protein S26-B
Chain Q1
60S ribosomal protein L41-A

Coloring options:


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