J4_4U3U_001

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

4U3U|1|1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U3U_001 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.086

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4U3U|1|1|U|112
4U3U|1|1|C|113
*
4U3U|1|1|G|267
4U3U|1|1|A|268
4U3U|1|1|G|269
4U3U|1|1|U|270
4U3U|1|1|C|271
4U3U|1|1|G|272
*
4U3U|1|1|C|293
4U3U|1|1|U|294
4U3U|1|1|A|295
4U3U|1|1|A|296
4U3U|1|1|G|297
4U3U|1|1|U|298
4U3U|1|1|G|299
*
4U3U|1|1|U|316
4U3U|1|1|A|317
4U3U|1|1|A|318
4U3U|1|1|A|319

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain M5

60S ribosomal protein L15-A

Chain O5

60S ribosomal protein L35-A

Chain O6

60S ribosomal protein L36-A