J4_8P9A_012

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

8P9A|1|AR|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|U|112
8P9A|1|AR|C|113
*
8P9A|1|AR|G|267
8P9A|1|AR|A|268
8P9A|1|AR|G|269
8P9A|1|AR|U|270
8P9A|1|AR|C|271
8P9A|1|AR|G|272
*
8P9A|1|AR|C|293
8P9A|1|AR|U|294
8P9A|1|AR|A|295
8P9A|1|AR|A|296
8P9A|1|AR|G|297
8P9A|1|AR|U|298
8P9A|1|AR|G|299
*
8P9A|1|AR|U|316
8P9A|1|AR|A|317
8P9A|1|AR|A|318
8P9A|1|AR|A|319

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain CP

60S ribosomal protein L15-A

Chain DJ

60S ribosomal protein L35-A

Chain DK

60S ribosomal protein L36-A