3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U3U_013 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.0589
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

4U3U|1|5|C|185
4U3U|1|5|U|186
4U3U|1|5|A|187
4U3U|1|5|U|188
4U3U|1|5|G|189
*
4U3U|1|5|C|205
4U3U|1|5|G|206
4U3U|1|5|U|207
4U3U|1|5|C|208
*
4U3U|1|5|G|212
4U3U|1|5|A|213
4U3U|1|5|G|214
*
4U3U|1|5|C|226
4U3U|1|5|G|227
4U3U|1|5|U|228
4U3U|1|5|G|229
4U3U|1|5|U|230
4U3U|1|5|G|231

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain l4
60S ribosomal protein L4-A
Chain n6
60S ribosomal protein L26-A

Coloring options:


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