J4_4U52_016
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4U52|1|5|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U52|1|5|U|1495
4U52|1|5|C|1496
*
4U52|1|5|G|1520
4U52|1|5|G|1521
4U52|1|5|U|1522
4U52|1|5|U|1523
4U52|1|5|A|1524
4U52|1|5|G|1525
*
4U52|1|5|C|1614
4U52|1|5|C|1615
*
4U52|1|5|G|1829
4U52|1|5|G|1830
4U52|1|5|U|1831
4U52|1|5|C|1832
4U52|1|5|G|1833
4U52|1|5|U|1834
4U52|1|5|A|1835
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m9
- 60S ribosomal protein L19-A
- Chain n5
- 60S ribosomal protein L25
- Chain o4
- 60S ribosomal protein L34-A
- Chain o8
- 60S ribosomal protein L38
- Chain o9
- 60S ribosomal protein L39
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