J4_9AXU_005
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9AXU|1|2|U|1557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9AXU|1|2|U|1529
9AXU|1|2|C|1530
*
9AXU|1|2|G|1554
9AXU|1|2|G|1555
9AXU|1|2|U|1556
9AXU|1|2|U|1557
9AXU|1|2|A|1558
9AXU|1|2|G|1559
*
9AXU|1|2|C|1649
9AXU|1|2|C|1650
*
9AXU|1|2|G|1884
9AXU|1|2|G|1885
9AXU|1|2|U|1886
9AXU|1|2|C|1887
9AXU|1|2|G|1888
9AXU|1|2|U|1889
9AXU|1|2|A|1890
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain d
- Large ribosomal subunit protein eL19B
- Chain j
- Large ribosomal subunit protein uL23A
- Chain s
- Large ribosomal subunit protein eL34B
- Chain w
- Large ribosomal subunit protein eL38A
- Chain x
- Large ribosomal subunit protein eL39
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