J4_4U53_019
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4U53|1|5|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U53_019 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1075
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4U53|1|5|C|2192
4U53|1|5|U|2193
4U53|1|5|G|2194
*
4U53|1|5|C|2248
4U53|1|5|G|2249
*
4U53|1|5|C|2267
4U53|1|5|U|2268
4U53|1|5|U|2269
4U53|1|5|A|2270
4U53|1|5|A|2271
4U53|1|5|G|2272
4U53|1|5|G|2273
4U53|1|5|U|2274
4U53|1|5|A|2275
4U53|1|5|G|2276
*
4U53|1|5|U|2310
4U53|1|5|G|2311
4U53|1|5|A|2312
4U53|1|5|A|2313
4U53|1|5|U|2314
4U53|1|5|G|2315
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain q1
- 60S ribosomal protein L41-A
Coloring options: