J4_4U67_002

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4U67|1|X|G|1284, 4U67|1|X|A|1285, 4U67|1|X|U|1286, 4U67|1|X|A|1287, 4U67|1|X|C|1663, 4U67|1|X|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U67_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.0705

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4U67|1|X|C|1283
4U67|1|X|G|1284
4U67|1|X|A|1285
4U67|1|X|U|1286
4U67|1|X|A|1287
4U67|1|X|A|1288
4U67|1|X|A|1289
*
4U67|1|X|U|1307
4U67|1|X|C|1308
*
4U67|1|X|G|1662
4U67|1|X|C|1663
4U67|1|X|G|1664
4U67|1|X|C|1665
*
4U67|1|X|G|1992
4U67|1|X|G|1993

Current chains

Chain X

23s RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32