J4_4U67_004

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UC*GGAAAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

4U67|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U67_004 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.0722

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

4U67|1|X|U|1326
4U67|1|X|C|1327
*
4U67|1|X|G|1351
4U67|1|X|G|1352
4U67|1|X|A|1353
4U67|1|X|A|1354
4U67|1|X|A|1355
4U67|1|X|G|1356
*
4U67|1|X|C|1417
4U67|1|X|C|1418
*
4U67|1|X|G|1613
4U67|1|X|C|1614
4U67|1|X|C|1615
4U67|1|X|C|1616
4U67|1|X|G|1617
4U67|1|X|U|1618
4U67|1|X|A|1619

Current chains

Chain X

23s RNA

Nearby chains

Chain Q

50S ribosomal protein L23