J4_4U67_006

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U67_006 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0701

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4U67|1|X|G|1763
4U67|1|X|A|1764
4U67|1|X|C|1765
4U67|1|X|U|1766
4U67|1|X|G|1767
*
4U67|1|X|C|1779
4U67|1|X|A|1780
4U67|1|X|C|1781
4U67|1|X|A|1782
4U67|1|X|G|1783
*
4U67|1|X|U|1819
4U67|1|X|G|1820
4U67|1|X|A|1821
4U67|1|X|C|1822
*
4U67|1|X|G|1958
4U67|1|X|U|1959
4U67|1|X|A|1960
4U67|1|X|A|1961
4U67|1|X|C|1962

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2