J4_4UG0_003

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUCC*GGCCGG*CCACGCGCGCGUC*GACGGCGGAGCGA

Length

37 nucleotides

Bulged bases

4UG0|1|L5|C|1237, 4UG0|1|L5|C|1267, 4UG0|1|L5|C|1272, 4UG0|1|L5|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|U|980
4UG0|1|L5|C|981
4UG0|1|L5|U|982
4UG0|1|L5|C|983
4UG0|1|L5|C|984
*
4UG0|1|L5|G|1069
4UG0|1|L5|G|1070
4UG0|1|L5|C|1071
4UG0|1|L5|C|1072
4UG0|1|L5|G|1073
4UG0|1|L5|G|1074
*
4UG0|1|L5|C|1236
4UG0|1|L5|C|1237
4UG0|1|L5|A|1238
4UG0|1|L5|C|1239
4UG0|1|L5|G|1240
4UG0|1|L5|C|1241
4UG0|1|L5|G|1242
4UG0|1|L5|C|1243
4UG0|1|L5|G|1244
4UG0|1|L5|C|1245
4UG0|1|L5|G|1246
4UG0|1|L5|U|1247
4UG0|1|L5|C|1248
*
4UG0|1|L5|G|1262
4UG0|1|L5|A|1263
4UG0|1|L5|C|1264
4UG0|1|L5|G|1265
4UG0|1|L5|G|1266
4UG0|1|L5|C|1267
4UG0|1|L5|G|1268
4UG0|1|L5|G|1269
4UG0|1|L5|A|1270
4UG0|1|L5|G|1271
4UG0|1|L5|C|1272
4UG0|1|L5|G|1273
4UG0|1|L5|A|1274

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S RIBOSOMAL PROTEIN L4

Chain LE

60S RIBOSOMAL PROTEIN L6

Chain LF

60S RIBOSOMAL PROTEIN L7