J4_4UG0_016

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGC*GUGCU*AGAGGUCG*CC

Length

20 nucleotides

Bulged bases

4UG0|1|S6|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|S6|G|8
4UG0|1|S6|U|9
4UG0|1|S6|G|10
4UG0|1|S6|G|11
4UG0|1|S6|C|12
*
4UG0|1|S6|G|24
4UG0|1|S6|U|25
4UG0|1|S6|G|26
4UG0|1|S6|C|27
4UG0|1|S6|U|28
*
4UG0|1|S6|A|42
4UG0|1|S6|G|43
4UG0|1|S6|A|44
4UG0|1|S6|G|45
4UG0|1|S6|G|46
4UG0|1|S6|U|47
4UG0|1|S6|C|48
4UG0|1|S6|G|49
*
4UG0|1|S6|C|65
4UG0|1|S6|C|66

Current chains

Chain S6

HUMAN INITIATOR MET-TRNA-I

Nearby chains

Chain Lo

60S RIBOSOMAL PROTEIN L36A

Chain SF

40S RIBOSOMAL PROTEIN S5

Chain SO

40S RIBOSOMAL PROTEIN S14