J4_4UG0_017

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAUG*CAGUG*CGACC*GAGGGUGUAAAUCUC

Length

32 nucleotides

Bulged bases

4UG0|1|L5|C|2768, 4UG0|1|L5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|G|2549
4UG0|1|L5|G|2550
4UG0|1|L5|A|2551
4UG0|1|L5|G|2552
4UG0|1|L5|A|2553
4UG0|1|L5|U|2554
4UG0|1|L5|G|2555
*
4UG0|1|L5|C|2572
4UG0|1|L5|A|2573
4UG0|1|L5|G|2574
4UG0|1|L5|U|2575
4UG0|1|L5|G|2576
*
4UG0|1|L5|C|2585
4UG0|1|L5|G|2586
4UG0|1|L5|A|2587
4UG0|1|L5|C|2588
4UG0|1|L5|C|2589
*
4UG0|1|L5|G|2756
4UG0|1|L5|A|2757
4UG0|1|L5|G|2758
4UG0|1|L5|G|2759
4UG0|1|L5|G|2760
4UG0|1|L5|U|2761
4UG0|1|L5|G|2762
4UG0|1|L5|U|2763
4UG0|1|L5|A|2764
4UG0|1|L5|A|2765
4UG0|1|L5|A|2766
4UG0|1|L5|U|2767
4UG0|1|L5|C|2768
4UG0|1|L5|U|2769
4UG0|1|L5|C|2770

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S RIBOSOMAL PROTEIN L27

Chain Lg

60S RIBOSOMAL PROTEIN L34