J4_4UG0_020
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4UG0|1|S6|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UG0_020 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2653
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4UG0|1|S6|G|8
4UG0|1|S6|U|9
4UG0|1|S6|G|10
4UG0|1|S6|G|11
*
4UG0|1|S6|U|25
4UG0|1|S6|G|26
4UG0|1|S6|C|27
*
4UG0|1|S6|G|43
4UG0|1|S6|A|44
4UG0|1|S6|G|45
4UG0|1|S6|G|46
4UG0|1|S6|U|47
4UG0|1|S6|C|48
4UG0|1|S6|G|49
*
4UG0|1|S6|C|65
4UG0|1|S6|C|66
Current chains
- Chain S6
- HUMAN INITIATOR MET-TRNA-I
Nearby chains
- Chain Lo
- 60S RIBOSOMAL PROTEIN L36A
- Chain SF
- 40S RIBOSOMAL PROTEIN S5
- Chain SO
- 40S RIBOSOMAL PROTEIN S14
Coloring options: