J4_4UJC_005

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGA*UUUGUGAAGGGCAGGG*CCCGUGCCUUGGAAAG*UC

Length

38 nucleotides

Bulged bases

4UJC|1|A2|A|2673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|2595
4UJC|1|A2|G|2596
4UJC|1|A2|G|2597
4UJC|1|A2|A|2598
*
4UJC|1|A2|U|2612
4UJC|1|A2|U|2613
4UJC|1|A2|U|2614
4UJC|1|A2|G|2615
4UJC|1|A2|U|2616
4UJC|1|A2|G|2617
4UJC|1|A2|A|2618
4UJC|1|A2|A|2619
4UJC|1|A2|G|2620
4UJC|1|A2|G|2621
4UJC|1|A2|G|2622
4UJC|1|A2|C|2623
4UJC|1|A2|A|2624
4UJC|1|A2|G|2625
4UJC|1|A2|G|2626
4UJC|1|A2|G|2627
*
4UJC|1|A2|C|2660
4UJC|1|A2|C|2661
4UJC|1|A2|C|2662
4UJC|1|A2|G|2663
4UJC|1|A2|U|2664
4UJC|1|A2|G|2665
4UJC|1|A2|C|2666
4UJC|1|A2|C|2667
4UJC|1|A2|U|2668
4UJC|1|A2|U|2669
4UJC|1|A2|G|2670
4UJC|1|A2|G|2671
4UJC|1|A2|A|2672
4UJC|1|A2|A|2673
4UJC|1|A2|A|2674
4UJC|1|A2|G|2675
*
4UJC|1|A2|U|2695
4UJC|1|A2|C|2696

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain BU

60S RIBOSOMAL PROTEIN L22

Chain Bg

60S RIBOSOMAL PROTEIN L34

Chain Bk

60S RIBOSOMAL PROTEIN L38