J4_4UJC_007

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

4UJC|1|A2|U|3787

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|3665
4UJC|1|A2|U|3666
4UJC|1|A2|G|3667
*
4UJC|1|A2|C|3721
4UJC|1|A2|G|3722
4UJC|1|A2|G|3723
*
4UJC|1|A2|C|3740
4UJC|1|A2|U|3741
4UJC|1|A2|U|3742
4UJC|1|A2|A|3743
4UJC|1|A2|A|3744
4UJC|1|A2|G|3745
4UJC|1|A2|G|3746
4UJC|1|A2|U|3747
4UJC|1|A2|A|3748
4UJC|1|A2|G|3749
*
4UJC|1|A2|U|3783
4UJC|1|A2|G|3784
4UJC|1|A2|A|3785
4UJC|1|A2|A|3786
4UJC|1|A2|U|3787
4UJC|1|A2|G|3788

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain Bn

60S RIBOSOMAL PROTEIN L41

Chain C1

Small subunit ribosomal RNA; SSU rRNA