J4_4UJC_009

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUAAUC*GUUC*GUG*CGCC

Length

17 nucleotides

Bulged bases

4UJC|1|A2|A|4549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|4547
4UJC|1|A2|U|4548
4UJC|1|A2|A|4549
4UJC|1|A2|A|4550
4UJC|1|A2|U|4551
4UJC|1|A2|C|4552
*
4UJC|1|A2|G|4578
4UJC|1|A2|U|4579
4UJC|1|A2|U|4580
4UJC|1|A2|C|4581
*
4UJC|1|A2|G|4636
4UJC|1|A2|U|4637
4UJC|1|A2|G|4638
*
4UJC|1|A2|C|4672
4UJC|1|A2|G|4673
4UJC|1|A2|C|4674
4UJC|1|A2|C|4675

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BO

60S RIBOSOMAL PROTEIN L13A

Chain BV

60S RIBOSOMAL PROTEIN L23