J4_4UJC_010
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGGAUAG*CAG*CGUGUCC*GUCCG
- Length
- 22 nucleotides
- Bulged bases
- 4UJC|1|AA|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJC_010 not in the Motif Atlas
- Homologous match to J4_6GSL_030
- Geometric discrepancy: 0.4699
- The information below is about J4_6GSL_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|AA|C|4
4UJC|1|AA|G|5
4UJC|1|AA|G|6
4UJC|1|AA|A|7
4UJC|1|AA|U|8
4UJC|1|AA|A|9
4UJC|1|AA|G|10
*
4UJC|1|AA|C|25
4UJC|1|AA|A|26
4UJC|1|AA|G|27
*
4UJC|1|AA|C|43
4UJC|1|AA|G|44
4UJC|1|AA|U|45
4UJC|1|AA|G|46
4UJC|1|AA|U|47
4UJC|1|AA|C|48
4UJC|1|AA|C|49
*
4UJC|1|AA|G|65
4UJC|1|AA|U|66
4UJC|1|AA|C|67
4UJC|1|AA|C|68
4UJC|1|AA|G|69
Current chains
- Chain AA
- TRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AB
- EIF5B
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11
- Chain C1
- Small subunit ribosomal RNA; SSU rRNA
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
Coloring options: