J4_4UJC_016

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCAAGUC*GCCCAGCCC*GAC*GGUAGCG

Length

26 nucleotides

Bulged bases

4UJC|1|A2|U|197, 4UJC|1|A2|C|213, 4UJC|1|A2|C|214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|192
4UJC|1|A2|C|193
4UJC|1|A2|A|194
4UJC|1|A2|A|195
4UJC|1|A2|G|196
4UJC|1|A2|U|197
4UJC|1|A2|C|198
*
4UJC|1|A2|G|211
4UJC|1|A2|C|212
4UJC|1|A2|C|213
4UJC|1|A2|C|214
4UJC|1|A2|A|215
4UJC|1|A2|G|216
4UJC|1|A2|C|217
4UJC|1|A2|C|218
4UJC|1|A2|C|219
*
4UJC|1|A2|G|223
4UJC|1|A2|A|224
4UJC|1|A2|C|225
*
4UJC|1|A2|G|237
4UJC|1|A2|G|238
4UJC|1|A2|U|239
4UJC|1|A2|A|240
4UJC|1|A2|G|241
4UJC|1|A2|C|242
4UJC|1|A2|G|243

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BY

60S RIBOSOMAL PROTEIN L26

Chain Bj

60S RIBOSOMAL PROTEIN L37