J4_4UJD_002

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

4UJD|1|A2|A|2343, 4UJD|1|A2|U|2346, 4UJD|1|A2|A|2347, 4UJD|1|A2|U|2803, 4UJD|1|A2|U|2805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|2342
4UJD|1|A2|A|2343
4UJD|1|A2|A|2344
4UJD|1|A2|A|2345
4UJD|1|A2|U|2346
4UJD|1|A2|A|2347
4UJD|1|A2|U|2348
*
4UJD|1|A2|A|2366
4UJD|1|A2|G|2367
4UJD|1|A2|G|2368
*
4UJD|1|A2|C|2801
4UJD|1|A2|A|2802
4UJD|1|A2|U|2803
4UJD|1|A2|G|2804
4UJD|1|A2|U|2805
4UJD|1|A2|U|2806
*
4UJD|1|A2|A|3825
4UJD|1|A2|G|3826

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Ad

60S RIBOSOMAL PROTEIN L31