J4_4UJD_003
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4UJD|1|A2|C|2414, 4UJD|1|A2|A|2415
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|G|2383
4UJD|1|A2|G|2384
4UJD|1|A2|U|2385
4UJD|1|A2|U|2386
4UJD|1|A2|C|2387
*
4UJD|1|A2|G|2411
4UJD|1|A2|G|2412
4UJD|1|A2|U|2413
4UJD|1|A2|C|2414
4UJD|1|A2|A|2415
4UJD|1|A2|G|2416
*
4UJD|1|A2|U|2515
4UJD|1|A2|C|2516
*
4UJD|1|A2|G|2754
4UJD|1|A2|G|2755
4UJD|1|A2|C|2756
4UJD|1|A2|C|2757
4UJD|1|A2|G|2758
4UJD|1|A2|U|2759
4UJD|1|A2|A|2760
4UJD|1|A2|C|2761
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S RIBOSOMAL PROTEIN L19
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ag
- 60S RIBOSOMAL PROTEIN L34
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Ak
- 60S RIBOSOMAL PROTEIN L38
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
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