J4_4UJD_007

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

4UJD|1|A2|U|3787

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|3665
4UJD|1|A2|U|3666
4UJD|1|A2|G|3667
*
4UJD|1|A2|C|3721
4UJD|1|A2|G|3722
4UJD|1|A2|G|3723
*
4UJD|1|A2|C|3740
4UJD|1|A2|U|3741
4UJD|1|A2|U|3742
4UJD|1|A2|A|3743
4UJD|1|A2|A|3744
4UJD|1|A2|G|3745
4UJD|1|A2|G|3746
4UJD|1|A2|U|3747
4UJD|1|A2|A|3748
4UJD|1|A2|G|3749
*
4UJD|1|A2|U|3783
4UJD|1|A2|G|3784
4UJD|1|A2|A|3785
4UJD|1|A2|A|3786
4UJD|1|A2|U|3787
4UJD|1|A2|G|3788

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain An

60S RIBOSOMAL PROTEIN L41

Chain BA

Transfer RNA; tRNA

Chain BB

EIF5B

Chain C1

Small subunit ribosomal RNA; SSU rRNA