J4_4UJD_010
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGGAUAG*CAG*CGUGUCC*GUCCG
- Length
- 22 nucleotides
- Bulged bases
- 4UJD|1|BA|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJD_010 not in the Motif Atlas
- Homologous match to J4_6GSL_030
- Geometric discrepancy: 0.4699
- The information below is about J4_6GSL_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|BA|C|4
4UJD|1|BA|G|5
4UJD|1|BA|G|6
4UJD|1|BA|A|7
4UJD|1|BA|U|8
4UJD|1|BA|A|9
4UJD|1|BA|G|10
*
4UJD|1|BA|C|25
4UJD|1|BA|A|26
4UJD|1|BA|G|27
*
4UJD|1|BA|C|43
4UJD|1|BA|G|44
4UJD|1|BA|U|45
4UJD|1|BA|G|46
4UJD|1|BA|U|47
4UJD|1|BA|C|48
4UJD|1|BA|C|49
*
4UJD|1|BA|G|65
4UJD|1|BA|U|66
4UJD|1|BA|C|67
4UJD|1|BA|C|68
4UJD|1|BA|G|69
Current chains
- Chain BA
- TRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AJ
- 60S RIBOSOMAL PROTEIN L11
- Chain BB
- EIF5B
- Chain C1
- Small subunit ribosomal RNA; SSU rRNA
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
Coloring options: