J4_4UJD_012

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAAC*GA*UUG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|BC|G|153
4UJD|1|BC|A|154
4UJD|1|BC|A|155
4UJD|1|BC|C|156
*
4UJD|1|BC|G|171
4UJD|1|BC|A|172
*
4UJD|1|BC|U|227
4UJD|1|BC|U|228
4UJD|1|BC|G|229
*
4UJD|1|BC|C|238
4UJD|1|BC|C|239

Current chains

Chain BC

HCV-IRES

Nearby chains

Chain CH

40S RIBOSOMAL PROTEIN ES7

Chain Cb

40S RIBOSOMAL PROTEIN ES27