J4_4UJD_013

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGACG*CGG

Length

21 nucleotides

Bulged bases

4UJD|1|C1|A|104, 4UJD|1|C1|C|356, 4UJD|1|C1|G|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|C|98
4UJD|1|C1|A|99
4UJD|1|C1|U|100
4UJD|1|C1|U|101
4UJD|1|C1|A|102
4UJD|1|C1|A|103
4UJD|1|C1|A|104
4UJD|1|C1|U|105
4UJD|1|C1|C|106
*
4UJD|1|C1|G|355
4UJD|1|C1|C|356
4UJD|1|C1|C|357
*
4UJD|1|C1|G|405
4UJD|1|C1|U|406
4UJD|1|C1|G|407
4UJD|1|C1|A|408
4UJD|1|C1|C|409
4UJD|1|C1|G|410
*
4UJD|1|C1|C|430
4UJD|1|C1|G|431
4UJD|1|C1|G|432

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CI

40S RIBOSOMAL PROTEIN ES8

Chain CL

40S RIBOSOMAL PROTEIN US17

Chain CX

40S RIBOSOMAL PROTEIN US12