J4_4UJD_014
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 4UJD|1|C1|A|668, 4UJD|1|C1|A|672, 4UJD|1|C1|A|1083, 4UJD|1|C1|G|1086, 4UJD|1|C1|U|1088
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|C1|G|665
4UJD|1|C1|U|666
4UJD|1|C1|U|667
4UJD|1|C1|A|668
4UJD|1|C1|A|669
4UJD|1|C1|A|670
4UJD|1|C1|A|671
4UJD|1|C1|A|672
4UJD|1|C1|G|673
*
4UJD|1|C1|C|1032
4UJD|1|C1|G|1033
4UJD|1|C1|A|1034
4UJD|1|C1|A|1035
4UJD|1|C1|A|1036
4UJD|1|C1|G|1037
*
4UJD|1|C1|C|1078
4UJD|1|C1|C|1079
4UJD|1|C1|A|1080
4UJD|1|C1|U|1081
4UJD|1|C1|A|1082
4UJD|1|C1|A|1083
4UJD|1|C1|A|1084
4UJD|1|C1|C|1085
4UJD|1|C1|G|1086
4UJD|1|C1|A|1087
4UJD|1|C1|U|1088
4UJD|1|C1|G|1089
*
4UJD|1|C1|U|1160
4UJD|1|C1|U|1161
4UJD|1|C1|C|1162
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain An
- 60S RIBOSOMAL PROTEIN L41
- Chain CC
- 40S RIBOSOMAL PROTEIN US5
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
Coloring options: